PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909493.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 1925aa    MW: 208273 Da    PI: 5.2168
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909493.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-0619051925526
                      --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                      +Cr f+++G+Ck G++C+++H+
  XP_010909493.1 1905 ICR-FHENGHCKKGASCNYIHS 1925
                      688.9999*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.32E-8294354IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.7E-9303362IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.653307373IPR019787Zinc finger, PHD-finger
SMARTSM002491.1E-7309355IPR001965Zinc finger, PHD-type
CDDcd155681.01E-21309354No hitNo description
PROSITE patternPS013590310370IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.109.6E-27529618IPR003121SWIB/MDM2 domain
SuperFamilySSF475921.96E-20534613IPR003121SWIB/MDM2 domain
PfamPF022019.3E-16539612IPR003121SWIB/MDM2 domain
SMARTSM001510.001548617IPR019835SWIB domain
SMARTSM007191.0E-48673783IPR004343Plus-3 domain
PROSITE profilePS5136028.751673806IPR004343Plus-3 domain
SuperFamilySSF1590428.76E-33674803IPR004343Plus-3 domain
PfamPF031263.3E-22678781IPR004343Plus-3 domain
SuperFamilySSF552771.15E-1710141072IPR003169GYF domain
PROSITE profilePS5082916.06710191073IPR003169GYF domain
CDDcd000729.48E-1710191074No hitNo description
SMARTSM004443.4E-2010201075IPR003169GYF domain
Gene3DG3DSA:3.30.1490.404.9E-1810211073IPR003169GYF domain
PfamPF022131.1E-1310211065IPR003169GYF domain
PROSITE profilePS5010313.56319001925IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1925 aa     Download sequence    Send to blast
MGGPEEEEVH GPPPMNQLSE ENPPPPPVVG EAGILSCEWR EDREAAKGSQ LPVSPALSPS  60
SVFGEDEKCP ALETDAAATC GVAGGDDSLE QEAIQMAVDV VLERQEDPAV PGSPAVFLPP  120
SSGEDKKAPI LETDVAATGG DAEGDDVMKE DFARMAVNMV EPQVDLPCRS SPVASPSSHA  180
EDEEGPVFWP DAATTSGIAG GDDVLEVGAT RMAIDAMEPQ AEPRSLGSPS SSGGGEKKKD  240
LASETDEATI SPFGGGDAVV EEEDEQISAE ATESPIGRVR RGGGRWKRGR PQKAHVGRAL  300
VRRKEEEEVC FICFDGGDLV VCDRRGCPKV YHPSCVNRDE AFFRAKGRWN CGWHICNICE  360
KSSHYICYTC TYSLCKGCIR EARFICVRGT KGFCETCMST VMLIETNEHG NEKKDGVDFD  420
DRSSWEFLFK DYWLDLKGKL SLTLEELKRA RTPQKDSSLI SRNVESTDDL CDAKNDQQAS  480
SDSSSGHPEE RISPRKNEES IFAKKKGKKG SRKTTNKEGL AKEPENTGTS TCKDISWASD  540
ELLEFVAHMK DGDISELSQF DVQALLLEYI KRNNLRDRRR KSQIICDSRL ENLFGKSRVG  600
HFEMLKLLES HFLMKEASPL DTDDNQGGVV DPDPMDVEGN SDASIMTTSD NRRKSRRKVE  660
GKEPQTNLDD FAAIDVHNIR LIYLRRNLME DLLDDIDTFN EKVIGSFVRI RICGVGQRQD  720
VYRLVQVKGT CKAADKYKSG KKTTDVMLEI LNLDKTELIT IDIISNQEFT EEECKRLRQS  780
IKCGFISRLT VGEVQEKARA LQAVRVNDWL ESEKLRLAHL RDRASEKGRS KELRECVEKL  840
RLLNMPEDRN RRLNEVPEIH ADPHMSPDYE TAEEEEEPDS KRHDHYSRSR ASAFLRKGKE  900
LTSPGRGISI SGDNWNDSRK NSNIGESSRS ILTEGASNKS ASRVGITNES SWKQGNDVHQ  960
TRSWEPPKTP TNATGLETGA WDNNQHGLRP GQSSGVQPGT PTAFLSTGVA VPSNASESEK  1020
IWHYHDPSGK IQGPFSMVQL RKWSTTGYFP TNLRIWKTFE KQEDSILLTD ALSGKFRNDL  1080
PQCEPAHNSL TDDKQNVANW KASRNDANLS TPGINEAAKA DRFVTRPSAW SAPKTEVINP  1140
NEGGFGTSSR DQGSSKGMNA GPGQMQGWNG ARTAASFTGS PYQPLSHQSS GSRGGNSGRW  1200
NGIQDHGSNW GSNKPMGSHP TSQVYDKPHP QWSSSSHQSS EDMSQVQTSE FSNQWKNDSF  1260
NLPTAPQLGS RDSTCEQGAL NNSLPSSASV QPMISGRGTT PSSNEAHQSS SSSGMSSKTT  1320
MSDSVGPSGS SAVTDMLKQT VTADGGNPHP AAMASMPNTA EVVDTMGSSQ LSDKAVNRGK  1380
FQISSHQKKP SAHESSMTLE NLPSLELPYG DEVIPPSTDT QLSGGLDKNQ CPQSDYTCPA  1440
SGSEQVSGDV LSSECSETVP SQLNDRQDRR VVWQGQHGLG KKWAEAHDSF ADKTGKSLVD  1500
GRGSDPCSVV DARDTNLITE SDALEPESAP QSEISSGPNL GSESLGWASY SAPKQKPDSS  1560
CPNPPSAENR SEQNQSPRPE PSLAAPECIN SHNLRIPSDG KCIEHLMHAP AIKMISSEWS  1620
GGANSTFGDS QNVHFVLSDG SKPLASSQCE ASASVEPAQS SNAGLSAVAH VQNTFWGVAP  1680
QNPNMGPGSQ GNANMNWATT IQSNMNMGWG LIAQSNMNVS QGTPAQGFAN LNMGFGAPPQ  1740
ANMVVNAGWV PAAPGNTNAN PAWGTPFQGN PSPGTAWGAQ VQGSMTVNPG WGTFPQSNTN  1800
PNPGLVTPPS GNANQNASWG APTQGNMDTN LSTWRSGQGN MNLTWDPSGG DMNSWNTPQA  1860
QAGDRHSGQG GSDSGHSAGR PMWNRIQSSG GGGSSRPPSR GQRGICRFHE NGHCKKGASC  1920
NYIHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2naa_A7e-13305376472Histone-lysine N-methyltransferase, H3 lysine
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909493.10.0PREDICTED: zinc finger CCCH domain-containing protein 19-like isoform X2
TrEMBLM0SL680.0M0SL68_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P05010_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding